BEGIN:VCALENDAR
VERSION:2.0
PRODID:-//KB8029//course schedule//EN
CALSCALE:GREGORIAN
METHOD:PUBLISH
X-WR-CALNAME:KB8029 Bioinformatics & Deep Learning
X-WR-TIMEZONE:Europe/Stockholm
BEGIN:VTIMEZONE
TZID:Europe/Stockholm
BEGIN:DAYLIGHT
TZOFFSETFROM:+0100
TZOFFSETTO:+0200
TZNAME:CEST
DTSTART:19700329T020000
RRULE:FREQ=YEARLY;BYMONTH=3;BYDAY=-1SU
END:DAYLIGHT
BEGIN:STANDARD
TZOFFSETFROM:+0200
TZOFFSETTO:+0100
TZNAME:CET
DTSTART:19701025T030000
RRULE:FREQ=YEARLY;BYMONTH=10;BYDAY=-1SU
END:STANDARD
END:VTIMEZONE
BEGIN:VEVENT
UID:ce88ab3f67c562e3@kb8029.course.bioinfo.se
DTSTAMP:20261023T163132Z
DTSTART;TZID=Europe/Stockholm:20270222T090000
DTEND;TZID=Europe/Stockholm:20270222T120000
SUMMARY:KB8029 Lecture 0 + 1: Introduction to the Course + Math Prerequisit
 es
LOCATION:Air&Fire (Gamma 2)
DESCRIPTION:Arne Elofsson\nIntroduction and Math
URL:https://course.bioinfo.se/session00.html
END:VEVENT
BEGIN:VEVENT
UID:369a9c5b37a8b054@kb8029.course.bioinfo.se
DTSTAMP:20261023T163132Z
DTSTART;TZID=Europe/Stockholm:20270224T090000
DTEND;TZID=Europe/Stockholm:20270224T120000
SUMMARY:KB8029 Lecture 2: Working like a computational biologist in Python
LOCATION:Air&Fire (Gamma 2)
DESCRIPTION:Arne Elofsson\nProgramming intro
URL:https://course.bioinfo.se/session02.html
END:VEVENT
BEGIN:VEVENT
UID:42ba69a8d39c25fe@kb8029.course.bioinfo.se
DTSTAMP:20261023T163132Z
DTSTART;TZID=Europe/Stockholm:20270224T130000
DTEND;TZID=Europe/Stockholm:20270224T160000
SUMMARY:KB8029 Lab 2: Working like a computational biologist in Python
LOCATION:Air&Fire (Gamma 2)
DESCRIPTION:Arne Elofsson\; TAs: Matteo Tadiello (responsible)\, Vsevolod V
 iliuga\nProgramming intro
URL:https://course.bioinfo.se/session02.html
END:VEVENT
BEGIN:VEVENT
UID:dc7c01dd723d9a21@kb8029.course.bioinfo.se
DTSTAMP:20261023T163132Z
DTSTART;TZID=Europe/Stockholm:20270225T235900
DTEND;TZID=Europe/Stockholm:20270226T000000
SUMMARY:KB8029 Lab 2 quiz due
LOCATION:Canvas
DESCRIPTION:Submit the lab quiz on Canvas.
URL:https://canvas.su.se/
END:VEVENT
BEGIN:VEVENT
UID:ececd54baa202fa6@kb8029.course.bioinfo.se
DTSTAMP:20261023T163132Z
DTSTART;TZID=Europe/Stockholm:20270226T090000
DTEND;TZID=Europe/Stockholm:20270226T120000
SUMMARY:KB8029 Lecture 3: Biological Databases
LOCATION:Air&Fire (Gamma 2)
DESCRIPTION:Petras Kundrotas\nBiological Databases
URL:https://course.bioinfo.se/session03.html
END:VEVENT
BEGIN:VEVENT
UID:ae99e6a32e60422b@kb8029.course.bioinfo.se
DTSTAMP:20261023T163132Z
DTSTART;TZID=Europe/Stockholm:20270226T130000
DTEND;TZID=Europe/Stockholm:20270226T160000
SUMMARY:KB8029 Lab 3: Biological Databases
LOCATION:Air&Fire (Gamma 2)
DESCRIPTION:Petras Kundrotas\; TAs: Marko Ludaic (responsible)\, Matteo Tad
 iello\nBiological Databases
URL:https://course.bioinfo.se/session03.html
END:VEVENT
BEGIN:VEVENT
UID:631dce3c9a63ec4a@kb8029.course.bioinfo.se
DTSTAMP:20261023T163132Z
DTSTART;TZID=Europe/Stockholm:20270228T235900
DTEND;TZID=Europe/Stockholm:20270301T000000
SUMMARY:KB8029 Lab 3 quiz due
LOCATION:Canvas
DESCRIPTION:Submit the lab quiz on Canvas.
URL:https://canvas.su.se/
END:VEVENT
BEGIN:VEVENT
UID:47a3b129cf7ab72c@kb8029.course.bioinfo.se
DTSTAMP:20261023T163132Z
DTSTART;TZID=Europe/Stockholm:20270301T090000
DTEND;TZID=Europe/Stockholm:20270301T120000
SUMMARY:KB8029 Lecture 4: Sequence Alignment
LOCATION:Air&Fire (Gamma 2)
DESCRIPTION:Petras Kundrotas\nSequence alignments
URL:https://course.bioinfo.se/session04.html
END:VEVENT
BEGIN:VEVENT
UID:acefd1d2d08399b6@kb8029.course.bioinfo.se
DTSTAMP:20261023T163132Z
DTSTART;TZID=Europe/Stockholm:20270301T130000
DTEND;TZID=Europe/Stockholm:20270301T160000
SUMMARY:KB8029 Lab 4: Sequence Alignment
LOCATION:Air&Fire (Gamma 2)
DESCRIPTION:Petras Kundrotas\; TAs: Marko Ludaic (responsible)\, Matteo Tad
 iello\nSequence alignments
URL:https://course.bioinfo.se/session04.html
END:VEVENT
BEGIN:VEVENT
UID:29c19d81470c055a@kb8029.course.bioinfo.se
DTSTAMP:20261023T163132Z
DTSTART;TZID=Europe/Stockholm:20270302T235900
DTEND;TZID=Europe/Stockholm:20270303T000000
SUMMARY:KB8029 Lab 4 quiz due
LOCATION:Canvas
DESCRIPTION:Submit the lab quiz on Canvas.
URL:https://canvas.su.se/
END:VEVENT
BEGIN:VEVENT
UID:68cfca1326461d9e@kb8029.course.bioinfo.se
DTSTAMP:20261023T163132Z
DTSTART;TZID=Europe/Stockholm:20270303T090000
DTEND;TZID=Europe/Stockholm:20270303T120000
SUMMARY:KB8029 Lecture 5: Advanced Database Search & Profile Methods
LOCATION:Air&Fire (Gamma 2)
DESCRIPTION:Petras Kundrotas\nAdvanced sequence alignments
URL:https://course.bioinfo.se/session05.html
END:VEVENT
BEGIN:VEVENT
UID:9d16cc0a97287872@kb8029.course.bioinfo.se
DTSTAMP:20261023T163132Z
DTSTART;TZID=Europe/Stockholm:20270303T130000
DTEND;TZID=Europe/Stockholm:20270303T160000
SUMMARY:KB8029 Lab 5: Advanced Database Search & Profile Methods
LOCATION:Air&Fire (Gamma 2)
DESCRIPTION:Petras Kundrotas\; TAs: Sarah Narrowe Danielsson (responsible)\
 , Marko Ludaic\nAdvanced sequence alignments
URL:https://course.bioinfo.se/session05.html
END:VEVENT
BEGIN:VEVENT
UID:420dde1ecdb1235c@kb8029.course.bioinfo.se
DTSTAMP:20261023T163132Z
DTSTART;TZID=Europe/Stockholm:20270304T235900
DTEND;TZID=Europe/Stockholm:20270305T000000
SUMMARY:KB8029 Lab 5 quiz due
LOCATION:Canvas
DESCRIPTION:Submit the lab quiz on Canvas.
URL:https://canvas.su.se/
END:VEVENT
BEGIN:VEVENT
UID:cfda7cac49e7e343@kb8029.course.bioinfo.se
DTSTAMP:20261023T163132Z
DTSTART;TZID=Europe/Stockholm:20270305T090000
DTEND;TZID=Europe/Stockholm:20270305T120000
SUMMARY:KB8029 Lecture 6: Protein Structure
LOCATION:Air&Fire (Gamma 2)
DESCRIPTION:Petras Kundrotas\nProtein Structure
URL:https://course.bioinfo.se/session06.html
END:VEVENT
BEGIN:VEVENT
UID:19aa36706adf526f@kb8029.course.bioinfo.se
DTSTAMP:20261023T163132Z
DTSTART;TZID=Europe/Stockholm:20270305T130000
DTEND;TZID=Europe/Stockholm:20270305T160000
SUMMARY:KB8029 Lab 6: Protein Structure
LOCATION:Air&Fire (Gamma 2)
DESCRIPTION:Petras Kundrotas\; TAs: Sarah Narrowe Danielsson (responsible)\
 , Marko Ludaic\nProtein Structure
URL:https://course.bioinfo.se/session06.html
END:VEVENT
BEGIN:VEVENT
UID:2d6d7e5afb4f9b75@kb8029.course.bioinfo.se
DTSTAMP:20261023T163132Z
DTSTART;TZID=Europe/Stockholm:20270307T235900
DTEND;TZID=Europe/Stockholm:20270308T000000
SUMMARY:KB8029 Lab 6 quiz due
LOCATION:Canvas
DESCRIPTION:Submit the lab quiz on Canvas.
URL:https://canvas.su.se/
END:VEVENT
BEGIN:VEVENT
UID:9fe0f773687d9028@kb8029.course.bioinfo.se
DTSTAMP:20261023T163132Z
DTSTART;TZID=Europe/Stockholm:20270308T090000
DTEND;TZID=Europe/Stockholm:20270308T120000
SUMMARY:KB8029 Lecture 7: Linear Models\, Gradient Descent\, the XOR Proble
 m & Secondary Structure Prediction
LOCATION:Air&Fire (Gamma 2)
DESCRIPTION:Arne Elofsson\nLinear models and secondary structure
URL:https://course.bioinfo.se/session07.html
END:VEVENT
BEGIN:VEVENT
UID:554ee36980819324@kb8029.course.bioinfo.se
DTSTAMP:20261023T163132Z
DTSTART;TZID=Europe/Stockholm:20270308T130000
DTEND;TZID=Europe/Stockholm:20270308T160000
SUMMARY:KB8029 Lab 7: Linear Models\, Gradient Descent\, the XOR Problem & 
 Secondary Structure Prediction
LOCATION:Air&Fire (Gamma 2)
DESCRIPTION:Arne Elofsson\; TAs: Vsevolod Viliuga (responsible)\, Ines Cunh
 a\nLinear models and secondary structure
URL:https://course.bioinfo.se/session07.html
END:VEVENT
BEGIN:VEVENT
UID:c4304ffc3bb88b57@kb8029.course.bioinfo.se
DTSTAMP:20261023T163132Z
DTSTART;TZID=Europe/Stockholm:20270309T235900
DTEND;TZID=Europe/Stockholm:20270310T000000
SUMMARY:KB8029 Lab 7 quiz due
LOCATION:Canvas
DESCRIPTION:Submit the lab quiz on Canvas.
URL:https://canvas.su.se/
END:VEVENT
BEGIN:VEVENT
UID:c9219812b878eb51@kb8029.course.bioinfo.se
DTSTAMP:20261023T163132Z
DTSTART;TZID=Europe/Stockholm:20270309T090000
DTEND;TZID=Europe/Stockholm:20270309T120000
SUMMARY:KB8029 Lecture 8: Machine Learning Foundations & Practical PyTorch
LOCATION:Air&Fire (Gamma 2)
DESCRIPTION:Arne Elofsson\nMachine learning foundations and PyTorch (Tuesda
 y\, not Wednesday)
URL:https://course.bioinfo.se/session08.html
END:VEVENT
BEGIN:VEVENT
UID:cd9329bdcbb166e3@kb8029.course.bioinfo.se
DTSTAMP:20261023T163132Z
DTSTART;TZID=Europe/Stockholm:20270310T090000
DTEND;TZID=Europe/Stockholm:20270310T100000
SUMMARY:KB8029 Capstone project: introduction
LOCATION:Air&Fire
DESCRIPTION:Marko Ludaic
URL:https://course.bioinfo.se/capstone.html
END:VEVENT
BEGIN:VEVENT
UID:0d2c878a457cfcb0@kb8029.course.bioinfo.se
DTSTAMP:20261023T163132Z
DTSTART;TZID=Europe/Stockholm:20270310T100000
DTEND;TZID=Europe/Stockholm:20270310T120000
SUMMARY:KB8029 Questions and answers: Sessions 1-6
LOCATION:Air&Fire
DESCRIPTION:Petras Kundrotas\; TAs: Marko Ludaic\, Sarah Narrowe Danielsson
END:VEVENT
BEGIN:VEVENT
UID:3c6c791bdfc0352f@kb8029.course.bioinfo.se
DTSTAMP:20261023T163132Z
DTSTART;TZID=Europe/Stockholm:20270310T140000
DTEND;TZID=Europe/Stockholm:20270310T170000
SUMMARY:KB8029 Lab 8: Machine Learning Foundations & Practical PyTorch
LOCATION:Lunch Room (Gamma 2)
DESCRIPTION:Arne Elofsson\; TAs: Ines Cunha (responsible)\, Vsevolod Viliug
 a\nMachine learning foundations and PyTorch
URL:https://course.bioinfo.se/session08.html
END:VEVENT
BEGIN:VEVENT
UID:f3456916e884cec8@kb8029.course.bioinfo.se
DTSTAMP:20261023T163132Z
DTSTART;TZID=Europe/Stockholm:20270311T235900
DTEND;TZID=Europe/Stockholm:20270312T000000
SUMMARY:KB8029 Lab 8 quiz due
LOCATION:Canvas
DESCRIPTION:Submit the lab quiz on Canvas.
URL:https://canvas.su.se/
END:VEVENT
BEGIN:VEVENT
UID:ae210e78c12570f7@kb8029.course.bioinfo.se
DTSTAMP:20261023T163132Z
DTSTART;TZID=Europe/Stockholm:20270312T090000
DTEND;TZID=Europe/Stockholm:20270312T120000
SUMMARY:KB8029 Lecture 9: How a Neural Network Learns\, and Why Training Fa
 ils
LOCATION:Milky Way and Andromeda (Alfa 2)
DESCRIPTION:Arne Elofsson\nHow a neural network learns
URL:https://course.bioinfo.se/session09.html
END:VEVENT
BEGIN:VEVENT
UID:2782a67057df5dd1@kb8029.course.bioinfo.se
DTSTAMP:20261023T163132Z
DTSTART;TZID=Europe/Stockholm:20270312T140000
DTEND;TZID=Europe/Stockholm:20270312T170000
SUMMARY:KB8029 Lab 9: How a Neural Network Learns\, and Why Training Fails
LOCATION:Lunch Room (Gamma 2)
DESCRIPTION:Arne Elofsson\; TAs: Vsevolod Viliuga (responsible)\, Ines Cunh
 a\nHow a neural network learns
URL:https://course.bioinfo.se/session09.html
END:VEVENT
BEGIN:VEVENT
UID:7254ac28db7b2aba@kb8029.course.bioinfo.se
DTSTAMP:20261023T163132Z
DTSTART;TZID=Europe/Stockholm:20270314T235900
DTEND;TZID=Europe/Stockholm:20270315T000000
SUMMARY:KB8029 Lab 9 quiz due
LOCATION:Canvas
DESCRIPTION:Submit the lab quiz on Canvas.
URL:https://canvas.su.se/
END:VEVENT
BEGIN:VEVENT
UID:bd8d572eee761693@kb8029.course.bioinfo.se
DTSTAMP:20261023T163132Z
DTSTART;TZID=Europe/Stockholm:20270315T090000
DTEND;TZID=Europe/Stockholm:20270315T120000
SUMMARY:KB8029 Lecture 10: CNNs\, and How They Took Over Biology
LOCATION:Air&Fire (Gamma 2)
DESCRIPTION:Arne Elofsson\nCNNs in biology
URL:https://course.bioinfo.se/session10.html
END:VEVENT
BEGIN:VEVENT
UID:fbdef9d74e05de7c@kb8029.course.bioinfo.se
DTSTAMP:20261023T163132Z
DTSTART;TZID=Europe/Stockholm:20270315T130000
DTEND;TZID=Europe/Stockholm:20270315T160000
SUMMARY:KB8029 Lab 10: CNNs\, and How They Took Over Biology
LOCATION:Air&Fire (Gamma 2)
DESCRIPTION:Arne Elofsson\; TAs: Ines Cunha (responsible)\, Sarah Narrowe D
 anielsson\nCNNs in biology
URL:https://course.bioinfo.se/session10.html
END:VEVENT
BEGIN:VEVENT
UID:84e652fb39948114@kb8029.course.bioinfo.se
DTSTAMP:20261023T163132Z
DTSTART;TZID=Europe/Stockholm:20270316T235900
DTEND;TZID=Europe/Stockholm:20270317T000000
SUMMARY:KB8029 Lab 10 quiz due
LOCATION:Canvas
DESCRIPTION:Submit the lab quiz on Canvas.
URL:https://canvas.su.se/
END:VEVENT
BEGIN:VEVENT
UID:445278257cee0318@kb8029.course.bioinfo.se
DTSTAMP:20261023T163132Z
DTSTART;TZID=Europe/Stockholm:20270316T090000
DTEND;TZID=Europe/Stockholm:20270316T120000
SUMMARY:KB8029 Lecture 11: Sequences\, Language Models and SignalP
LOCATION:Air&Fire (Gamma 2)
DESCRIPTION:Arne Elofsson\nLanguage models and SignalP (Tuesday\, not Wedne
 sday)
URL:https://course.bioinfo.se/session11.html
END:VEVENT
BEGIN:VEVENT
UID:d480f6c55cfe422b@kb8029.course.bioinfo.se
DTSTAMP:20261023T163132Z
DTSTART;TZID=Europe/Stockholm:20270317T130000
DTEND;TZID=Europe/Stockholm:20270317T160000
SUMMARY:KB8029 Lab 11: Sequences\, Language Models and SignalP
LOCATION:Air&Fire (Gamma 2)
DESCRIPTION:Arne Elofsson\; TAs: Ines Cunha (responsible)\, Vsevolod Viliug
 a\nLanguage models and SignalP
URL:https://course.bioinfo.se/session11.html
END:VEVENT
BEGIN:VEVENT
UID:f9aaaf9e8fc22de0@kb8029.course.bioinfo.se
DTSTAMP:20261023T163132Z
DTSTART;TZID=Europe/Stockholm:20270318T235900
DTEND;TZID=Europe/Stockholm:20270319T000000
SUMMARY:KB8029 Lab 11 quiz due
LOCATION:Canvas
DESCRIPTION:Submit the lab quiz on Canvas.
URL:https://canvas.su.se/
END:VEVENT
BEGIN:VEVENT
UID:6ed7ee6715db1ee3@kb8029.course.bioinfo.se
DTSTAMP:20261023T163132Z
DTSTART;TZID=Europe/Stockholm:20270318T130000
DTEND;TZID=Europe/Stockholm:20270318T160000
SUMMARY:KB8029 Capstone project: help
LOCATION:To be booked
DESCRIPTION:Sarah Narrowe Danielsson\nRoom not booked yet.
URL:https://course.bioinfo.se/capstone.html
END:VEVENT
BEGIN:VEVENT
UID:708397bd02333dfe@kb8029.course.bioinfo.se
DTSTAMP:20261023T163132Z
DTSTART;TZID=Europe/Stockholm:20270319T090000
DTEND;TZID=Europe/Stockholm:20270319T120000
SUMMARY:KB8029 Lecture 12: AlphaFold and Generative Models of Protein Struc
 ture
LOCATION:Air&Fire (Gamma 2)
DESCRIPTION:Arne Elofsson\nAlphaFold and generative models
URL:https://course.bioinfo.se/session12.html
END:VEVENT
BEGIN:VEVENT
UID:a73055b2705d85be@kb8029.course.bioinfo.se
DTSTAMP:20261023T163132Z
DTSTART;TZID=Europe/Stockholm:20270319T130000
DTEND;TZID=Europe/Stockholm:20270319T150000
SUMMARY:KB8029 Questions and answers: Sessions 7-12
LOCATION:Air&Fire (Gamma 2)
DESCRIPTION:Arne Elofsson\; TAs: Ines Cunha\, Vsevolod Viliuga
END:VEVENT
BEGIN:VEVENT
UID:d968223486ea7671@kb8029.course.bioinfo.se
DTSTAMP:20261023T163132Z
DTSTART;TZID=Europe/Stockholm:20270319T150000
DTEND;TZID=Europe/Stockholm:20270319T180000
SUMMARY:KB8029 Lab 12: AlphaFold and Generative Models of Protein Structure
LOCATION:Air&Fire (Gamma 2)
DESCRIPTION:Arne Elofsson\; TAs: Matteo Tadiello (responsible)\, Sarah Narr
 owe Danielsson\nAlphaFold and generative models
URL:https://course.bioinfo.se/session12.html
END:VEVENT
BEGIN:VEVENT
UID:861afee32f09545b@kb8029.course.bioinfo.se
DTSTAMP:20261023T163132Z
DTSTART;TZID=Europe/Stockholm:20270321T235900
DTEND;TZID=Europe/Stockholm:20270322T000000
SUMMARY:KB8029 Lab 12 quiz due
LOCATION:Canvas
DESCRIPTION:Submit the lab quiz on Canvas.
URL:https://canvas.su.se/
END:VEVENT
BEGIN:VEVENT
UID:b535c25d1d99e214@kb8029.course.bioinfo.se
DTSTAMP:20261023T163132Z
DTSTART;TZID=Europe/Stockholm:20270322T083000
DTEND;TZID=Europe/Stockholm:20270322T123000
SUMMARY:KB8029 Exam
LOCATION:Air&Fire (Gamma 2)
END:VEVENT
BEGIN:VEVENT
UID:16a0cde81cd157da@kb8029.course.bioinfo.se
DTSTAMP:20261023T163132Z
DTSTART;TZID=Europe/Stockholm:20270322T130000
DTEND;TZID=Europe/Stockholm:20270322T170000
SUMMARY:KB8029 Capstone project: oral presentations of the code (early slot
 \, for students who want an Easter break)
LOCATION:Madrid (Gamma 7) + London (Gamma 7)
DESCRIPTION:TAs: Ines Cunha\, Vsevolod Viliuga\, Marko Ludaic\, Sarah Narro
 we Danielsson\, Matteo Tadiello
URL:https://course.bioinfo.se/capstone.html
END:VEVENT
BEGIN:VEVENT
UID:a0ccc77969f3b977@kb8029.course.bioinfo.se
DTSTAMP:20261023T163132Z
DTSTART;TZID=Europe/Stockholm:20270324T090000
DTEND;TZID=Europe/Stockholm:20270324T170000
SUMMARY:KB8029 Capstone project: oral presentations of the code (regular ti
 me)
LOCATION:Earth (Gamma 2) + Water (Gamma 2)
DESCRIPTION:TAs: Ines Cunha\, Vsevolod Viliuga\, Marko Ludaic\, Sarah Narro
 we Danielsson\, Matteo Tadiello
URL:https://course.bioinfo.se/capstone.html
END:VEVENT
BEGIN:VEVENT
UID:c7b1d469cad8acf2@kb8029.course.bioinfo.se
DTSTAMP:20261023T163132Z
DTSTART;TZID=Europe/Stockholm:20270325T235900
DTEND;TZID=Europe/Stockholm:20270325T235900
SUMMARY:KB8029 Deadline: Capstone project: code and report
LOCATION:Online
DESCRIPTION:TAs: Ines Cunha\, Vsevolod Viliuga\, Marko Ludaic\, Sarah Narro
 we Danielsson\, Matteo Tadiello
URL:https://course.bioinfo.se/capstone.html
END:VEVENT
END:VCALENDAR